The 545/550/555/562 were not the first AT saws were they? They certainly were not the first strato saws. I think their problems have more to do with packaging, attempts to make a saw that was very small, light and powerful, and general quality control issues. There's no excuse for the transfer cover seals - it's just a gasket.
In general, my hunch is that few engineers at the saw manufacturers knew much about carbs - after all they buy these from other companies. It appears that they may not have fully taken into account the consequences of reducing unburned fuel in regard to cooling, especially in a compact high performance saw.
Also, the "more advanced" AT system used in the Husqvarnas is a much more complicated control scheme. Remember that the AT/MT system has no sensor other than rpm and the lean out test. To do a lean out test you momentarily lean the mixture and watch the rpm results, and from that you can tell if you were too lean or too rich. But you must be able to see the results clearly, and that is difficult if the rpm is varying for other reasons. I understood that the first versions of AT only controlled full throttle mixture, but now they can control the mixture at any throttle position.
Next, apparently they can control the idle speed - I have tried to figure out how they do this, but the only real possibility is by controlling idle mixture - and this is a potential problem because you are mixing two different things. Let's say that you have to adjust the idle to a lean setting to get the idle speed correct. Now suddenly the throttle plate opens. It's too fast to adjust for the moving throttle, and since the throttle plate is moving you cannot do a lean out test anyway - so you have to just leave the mixture where it is, or maybe just take a guess and arbitrarily enrich the mixture for acceleration. But what if this is not the correct mixture for acceleration? Then you get a bog. There is no way for the system to tell.
I've been working on carbs of various types for a long time, and I really cannot stand a fuel system that is inapable of controlling the mixture like the conventional saw carbs (nor an engine that misfires), so I applaud the attempt to fix this defect. I also find the whole control scheme of AT to be very clever, and elegantly simple. I just wonder if they've attempted to push such a rudimentary control scheme a bit too far.