Speculation on my part, but here goes. The maximum delivery ratio of the transfer ports occurs at peak torque. That is when the most mixture from the crankcase is delivered into the cylinder and the piston closes the transfer ports.
Above that max torque point, there is less time for the mixture in the crankcase to move into the cylinder so the torque starts dropping off.
The opposite occurs below max torque, all the mixture goes into the cylinder at the lower rpm, but since the transfer port is still open and the piston is moving up - some of the mixture gets sucked back down in the crankcase - again the torque drops off.
OK, you put a direct passage into the intake manifold during the transfer period. At high rpms you may be getting some of your transfer port mixture back down through your modified port. At the lower rpm, below max torque, you will start sucking some of the mixture back down in the crankcase - this usually means you also suck some of the exhaust gas back in through the exhaust port. However, with open passage to the intake, you may be sucking some mixture from the intake directly into the cylinder.
I don't know how the powerband feels, but there may also be a contributing factor of intake resonance. It could be that a resonance wave is coming back down the intake as a positive pulse. Normally, it would bounce off the closed piston and head back out towards the carb. In your case, it may be that the positive wave is pushing extra mixture into the cylinder.