Hold the cylinder upright as it sits on the saw, squirt kerosene or gas etc. into the upper transfer ports and watch for debris coming down. If there's none it's clean.
That debris will cause the scratches in a heartbeat.
+1 Its debris in the cylinder... Lightly scored all the way around the piston. If I hone now I generally get a clean rag and a big bottle of carb cleaner and liberally clean the heck out of everything especially blast out the ports. Even if I run it through a parts washer I still make sure and blast it with carb cleaner afterwards.. After I do that I blow it out then take a dab of 2 stroke oil and lightly coat the cylinder with a clean finger... Use as little oil as possible and make sure its 2 stroke. I suppose you could use a lightly oiled rag but I never liked the idea of particles from the rag possible coming off in the cylinder. The ports and the cylinder dome are hard to get the grit out of if they aren't done right.